New publication: fast human read decontamination for SARS-CoV-2 Philip Fowler, 16th May 202216th May 2022 0 shares ReadItAndKeep is a new human-read decontamination algorithm that works by mapping the reads in a FASTQ file to the reference SARS-CoV-2 genome. This works because SARS-CoV-2 genetic variation is not so high as to lead to reads being incorrectly discarded and means the algorithm, which relies on minimap2, is both fast and has a low memory footprint. Published in Bioinformatics last week Share this:Twitter Related clinical microbiology computing gpas
citizen science Automated detection of bacterial growth on 96-well plates (AMyGDA) 11th December 20175th August 2018 I am involved in an international collaboration, the Comprehensive Resistance Prediction for Tuberculosis: an International Consortium… Share this:Twitter Read More
antimicrobial resistance New paper: predicting pyrazinamide resistance 20th March 202420th March 2024 This paper has finally been published and you can find it here. It had a… Share this:Twitter Read More
citizen science bashthebug.net alpha launch 3rd October 20166th April 2017 I’m planning to launch a citizen science project, bashthebug.net, in 2017 which has two distinct… Share this:Twitter Read More