antimicrobial resistance New preprint: predicting rifampicin resistance Philip Fowler, 16th August 202416th August 2024 In this preprint we train a series of machine learning models on protein mutations found… Continue Reading
antimicrobial resistance Updating the Grammar for Antimicrobial Resistance Catalogues Philip Fowler, 18th July 202418th July 2024 This blog updates an old (and now out of date) post describing the grammar we’ve… Continue Reading
clinical microbiology New preprint: processing SARS-CoV-2 genetics in the cloud Philip Fowler, 31st January 202431st January 2024 In this preprint, we describe how in July 2022 for two weeks seven sites in… Continue Reading
New publication: Predicting antibiotic resistance in complex protein targets using alchemical free energy methods Philip Fowler, 26th August 202224th October 2022 In this paper, Alice Brankin calculates how different mutations in the DNA gyrase affect the… Continue Reading
New publication: fast human read decontamination for SARS-CoV-2 Philip Fowler, 16th May 202216th May 2022 ReadItAndKeep is a new human-read decontamination algorithm that works by mapping the reads in a… Continue Reading
GPAS stopover on the ORACLE road trip Philip Fowler, 1st February 20221st February 2022 You can listen to Philip Fowler talk about the Global Pathogen Analysis System (GPAS) as… Continue Reading