Skip to content
Fowler Lab
Fowler Lab

Predicting antimicrobial resistance

  • News
  • Publications
  • Members
  • Research
    • Overview
    • Manifesto
    • Software
    • Reproducibility
  • Teaching
  • Contact
    • PhDs
  • Wiki
Fowler Lab
Fowler Lab

Predicting antimicrobial resistance

New publication: BashTheBug works!

Philip Fowler, 20th May 202219th July 2022

Yesterday eLife published the first paper from our citizen science project, BashTheBug, which was launched in April 2017 on the Zooniverse platform. (Update on 19 July 2022: the final formatted version of the paper has been posted on eLife).

Through BashTheBug we asked for volunteers to classify images of M. tuberculosis growing on a range of concentrations of 13 different antibiotics. The images were derived from photographs of 96-well plates taken after two weeks incubation by the CRyPTIC tuberculosis project. Each image is shown up to 17 times to different volunteers so we can obtain a consensus.

In total the volunteers did over 4.7 million classifications, and by examining a subset of images, this paper determines how best to obtain the consensus and how reproducible and accurate the crowd of volunteers are.

Photograph of 96-well plate collected by the CRyPTIC project and the CRyPTIC partner laboratories who contributed images to this study.

Share this:

  • Share on X (Opens in new window) X
  • Share on Bluesky (Opens in new window) Bluesky
  • Email a link to a friend (Opens in new window) Email
  • Share on LinkedIn (Opens in new window) LinkedIn
  • Share on Mastodon (Opens in new window) Mastodon

Related

antimicrobial resistance citizen science clinical microbiology publication research tuberculosis

Post navigation

Previous post
Next post

Related Posts

antimicrobial resistance

New software: pygsi

31st August 2018

Whenever a paper involving sequencing the genome of bacteria (or other species for that matter),…

Share this:

  • Share on X (Opens in new window) X
  • Share on Bluesky (Opens in new window) Bluesky
  • Email a link to a friend (Opens in new window) Email
  • Share on LinkedIn (Opens in new window) LinkedIn
  • Share on Mastodon (Opens in new window) Mastodon
Read More
clinical microbiology

New preprint: processing 3.9 million SARS-CoV-2 samples to make a consistent phylogenetic tree

7th May 20247th May 2024

Martin Hunt, Zam Iqbal and lots of others have written an epic preprint where they…

Share this:

  • Share on X (Opens in new window) X
  • Share on Bluesky (Opens in new window) Bluesky
  • Email a link to a friend (Opens in new window) Email
  • Share on LinkedIn (Opens in new window) LinkedIn
  • Share on Mastodon (Opens in new window) Mastodon
Read More

Updated preprint: A validated cloud-based genomic platform for co-ordinated, expedient global analysis of SARS-CoV-2 genomic epidemiology

23rd January 202528th January 2025

In August 2022 seven laboratories across the world uploaded their SARS-CoV-2 genetics files for processing…

Share this:

  • Share on X (Opens in new window) X
  • Share on Bluesky (Opens in new window) Bluesky
  • Email a link to a friend (Opens in new window) Email
  • Share on LinkedIn (Opens in new window) LinkedIn
  • Share on Mastodon (Opens in new window) Mastodon
Read More

Leave a Reply Cancel reply

Your email address will not be published. Required fields are marked *

This site uses Akismet to reduce spam. Learn how your comment data is processed.

Privacy & Cookies: This site uses cookies. By continuing to use this website, you agree to their use.

To find out more, including how to control cookies, see here: Cookie Policy
    ©2026 Fowler Lab | WordPress Theme by SuperbThemes

    Loading Comments...