Skip to content
Fowler Lab
Fowler Lab

Predicting antimicrobial resistance

  • News
  • Publications
  • Members
  • Research
    • Overview
    • Manifesto
    • Software
    • Reproducibility
  • Teaching
  • Contact
    • PhDs
  • Wiki
Fowler Lab
Fowler Lab

Predicting antimicrobial resistance

AMyGDA now available from GitHub

Philip Fowler, 27th January 202027th January 2020

AMyGDA is a python module that analyses photographs of 96-well plates and, by examining each well for bacterial growth, is able to read a series of minimum inhibitory concentrations for the antibiotics present on a plate.

Previously it was only available to download from this website (due to licensing) if you gave your email address which was inconvenient and also meant the public version often lagged the current stable release.

Now it is available directly from GitHub!

Share this:

  • Share on X (Opens in new window) X
  • Share on Bluesky (Opens in new window) Bluesky
  • Email a link to a friend (Opens in new window) Email
  • Share on LinkedIn (Opens in new window) LinkedIn
  • Share on Mastodon (Opens in new window) Mastodon

Related

antimicrobial resistance clinical microbiology computing tuberculosis

Post navigation

Previous post
Next post

Related Posts

antimicrobial resistance

Genetics and Tuberculosis: A Case of New Meets Old

12th July 2019

I was very pleased to be invited to contribute to this “Voices” article organised by…

Share this:

  • Share on X (Opens in new window) X
  • Share on Bluesky (Opens in new window) Bluesky
  • Email a link to a friend (Opens in new window) Email
  • Share on LinkedIn (Opens in new window) LinkedIn
  • Share on Mastodon (Opens in new window) Mastodon
Read More
antimicrobial resistance

New preprint: using genetics to analyse ESBL infections in a neonatal ICU ward

7th July 20267th July 2026

In this preprint, Melody Parker as part of her DPhil, has analysed a series of…

Share this:

  • Share on X (Opens in new window) X
  • Share on Bluesky (Opens in new window) Bluesky
  • Email a link to a friend (Opens in new window) Email
  • Share on LinkedIn (Opens in new window) LinkedIn
  • Share on Mastodon (Opens in new window) Mastodon
Read More
antimicrobial resistance

Updated preprint: predicting pyrazinamide resistance

21st November 20238th December 2023

This study was performed by Josh Carter back in 2019 and we uploaded a preprint…

Share this:

  • Share on X (Opens in new window) X
  • Share on Bluesky (Opens in new window) Bluesky
  • Email a link to a friend (Opens in new window) Email
  • Share on LinkedIn (Opens in new window) LinkedIn
  • Share on Mastodon (Opens in new window) Mastodon
Read More

Leave a Reply Cancel reply

Your email address will not be published. Required fields are marked *

This site uses Akismet to reduce spam. Learn how your comment data is processed.

Privacy & Cookies: This site uses cookies. By continuing to use this website, you agree to their use.

To find out more, including how to control cookies, see here: Cookie Policy
    ©2026 Fowler Lab | WordPress Theme by SuperbThemes