I’ve moved… Philip Fowler, 14th March 20165th August 2018 Today is my first day as a Senior Researcher in Modernising Medical Microbiology in the Nuffield Department of Medicine at the University of Oxford. Practically I’ll be based at the John Radcliffe Hospital in Oxford. I was a Postdoctoral Researcher in the SBCB Unit at the Department of Biochemistry for ten years, working with Professor Mark Sansom. During that time I used computer simulation to study the function of a variety of membrane proteins, focussing mainly on cell signalling, transporters and ion channels. Now I will be leading efforts to predict whether novel bacterial mutations lead to antibiotic resistance (or not). The key idea is to examine the effect of each mutation on the binding of the antibiotic to its target protein. This boils down to calculating how the binding free energy changes when you make the mutation — something that alchemical free energy methods, such as thermodynamic integration is well-suited to. More soon. Share this:TwitterBlueskyEmailLinkedInMastodon Related antimicrobial resistance clinical microbiology miscellaneous tuberculosis
New publication: Predicting antibiotic resistance in complex protein targets using alchemical free energy methods 26th August 202224th October 2022 In this paper, Alice Brankin calculates how different mutations in the DNA gyrase affect the… Share this:TwitterBlueskyEmailLinkedInMastodon Read More
miscellaneous Goodbye Hans Krebs Tower 12th August 2014 When I first started in Oxford our lab was based on the top floor of… Share this:TwitterBlueskyEmailLinkedInMastodon Read More
antimicrobial resistance BashTheBug reaches one million classifications 4th October 20184th October 2018 BashTheBug, a citizen science project I run that is helping us measure how different… Share this:TwitterBlueskyEmailLinkedInMastodon Read More
Congratulations, Phil! Cool to use statistical physics, computer simulations and structural biology to combat the pressing problem of bacterial resistance to antimicrobials. That’s a fight we (as a civilization) can’t afford to loose. Reply