New publication: CRyPTIC Data Compendium Philip Fowler, 16th August 202216th August 2022 The large and comprehensive dataset of clinical tuberculosis isolates collected by the CRyPTIC project is described in detail by this paper, just published in PLoS Biology. Each isolate was whole genome sequenced and had its minimum inhibitory concentration to 13 different antibiotics measured using a bespoke 96-well broth microdilution plate. Alice Brankin, along with Kerri Malone from Zam Iqbal’s group at the EBI, led this work. Share this:TwitterBlueskyEmailLinkedInMastodon Related antimicrobial resistance clinical microbiology tuberculosis
antimicrobial resistance Updating the Grammar for Antimicrobial Resistance Catalogues 18th July 202418th July 2024 This blog updates an old (and now out of date) post describing the grammar we’ve… Share this:TwitterBlueskyEmailLinkedInMastodon Read More
antimicrobial resistance New preprint: predicting rifampicin resistance 16th August 202416th August 2024 In this preprint we train a series of machine learning models on protein mutations found… Share this:TwitterBlueskyEmailLinkedInMastodon Read More
antimicrobial resistance New preprint: Deciphering bedaquiline and clofazimine resistance in tuberculosis 22nd March 202122nd March 2021 In this preprint we examine 14,151 clinical isolates drawn from the CRyPTIC dataset. Each isolate… Share this:TwitterBlueskyEmailLinkedInMastodon Read More