New preprint: processing SARS-CoV-2 genetics in the cloud Philip Fowler, 31st January 202431st January 2024 In this preprint, we describe how in July 2022 for two weeks seven sites in six continents uploaded raw genetics files derived from sequencing SARS-CoV-2 clinical samples to our cloud-based platform, GPAS. Overall 5,436 samples were uploaded to GPAS and, unsurprisingly at that time, various Omicron lineages dominated. More surprisingly was the finding that highly similar SARS-CoV-2 genomes could be found in multiple continents, indicative of the rapid rate that the virus was transported around the world. Share this: Click to share on X (Opens in new window) X Click to share on Bluesky (Opens in new window) Bluesky Click to email a link to a friend (Opens in new window) Email Click to share on LinkedIn (Opens in new window) LinkedIn Click to share on Mastodon (Opens in new window) Mastodon Related clinical microbiology distributed computing gpas
New preprint: automatically building a better bedaquiline catalogue 31st January 202531st January 2025 A catalogue recording whether individual mutations confer resistance or not to specified antibiotics is a… Share this: Click to share on X (Opens in new window) X Click to share on Bluesky (Opens in new window) Bluesky Click to email a link to a friend (Opens in new window) Email Click to share on LinkedIn (Opens in new window) LinkedIn Click to share on Mastodon (Opens in new window) Mastodon Read More
New publication: CRyPTIC Data Compendium 16th August 202216th August 2022 The large and comprehensive dataset of clinical tuberculosis isolates collected by the CRyPTIC project is… Share this: Click to share on X (Opens in new window) X Click to share on Bluesky (Opens in new window) Bluesky Click to email a link to a friend (Opens in new window) Email Click to share on LinkedIn (Opens in new window) LinkedIn Click to share on Mastodon (Opens in new window) Mastodon Read More
distributed computing Azure. Can I break it? Yes you can. 3rd December 201714th March 2018 In this post, I’ll spell out some of the problems we encountered using Microsoft Azure… Share this: Click to share on X (Opens in new window) X Click to share on Bluesky (Opens in new window) Bluesky Click to email a link to a friend (Opens in new window) Email Click to share on LinkedIn (Opens in new window) LinkedIn Click to share on Mastodon (Opens in new window) Mastodon Read More