Skip to content
Fowler Lab
Fowler Lab

Predicting antibiotic resistance de novo

  • News
  • Research
    • Overview
    • Manifesto
    • Software
    • Reproducibility
    • Publications
  • Members
  • Teaching
  • Contact
    • PhDs
  • Wiki
Fowler Lab
Fowler Lab

Predicting antibiotic resistance de novo

New preprint: processing SARS-CoV-2 genetics in the cloud

Philip Fowler, 31st January 202431st January 2024

In this preprint, we describe how in July 2022 for two weeks seven sites in six continents uploaded raw genetics files derived from sequencing SARS-CoV-2 clinical samples to our cloud-based platform, GPAS. Overall 5,436 samples were uploaded to GPAS and, unsurprisingly at that time, various Omicron lineages dominated. More surprisingly was the finding that highly similar SARS-CoV-2 genomes could be found in multiple continents, indicative of the rapid rate that the virus was transported around the world.

Share this:

  • Click to share on X (Opens in new window) X
  • Click to share on Bluesky (Opens in new window) Bluesky
  • Click to email a link to a friend (Opens in new window) Email
  • Click to share on LinkedIn (Opens in new window) LinkedIn
  • Click to share on Mastodon (Opens in new window) Mastodon

Related

clinical microbiology distributed computing gpas

Post navigation

Previous post
Next post

Related Posts

New publication: fast human read decontamination for SARS-CoV-2

16th May 202216th May 2022

ReadItAndKeep is a new human-read decontamination algorithm that works by mapping the reads in a…

Share this:

  • Click to share on X (Opens in new window) X
  • Click to share on Bluesky (Opens in new window) Bluesky
  • Click to email a link to a friend (Opens in new window) Email
  • Click to share on LinkedIn (Opens in new window) LinkedIn
  • Click to share on Mastodon (Opens in new window) Mastodon
Read More
distributed computing

Crowd-sourced computer networks

15th October 201323rd September 2018

Crowd-sourced computer networks Blog post on something I’ve been interested in for a while; how…

Share this:

  • Click to share on X (Opens in new window) X
  • Click to share on Bluesky (Opens in new window) Bluesky
  • Click to email a link to a friend (Opens in new window) Email
  • Click to share on LinkedIn (Opens in new window) LinkedIn
  • Click to share on Mastodon (Opens in new window) Mastodon
Read More
clinical microbiology

New publication: Antibody Status and Incidence of SARS-CoV-2 Infection in Health Care Workers

13th January 202113th January 2021

A second Covid-19 publication I’m proud to be (a small) part of has recently published…

Share this:

  • Click to share on X (Opens in new window) X
  • Click to share on Bluesky (Opens in new window) Bluesky
  • Click to email a link to a friend (Opens in new window) Email
  • Click to share on LinkedIn (Opens in new window) LinkedIn
  • Click to share on Mastodon (Opens in new window) Mastodon
Read More

Leave a Reply Cancel reply

Your email address will not be published. Required fields are marked *

This site uses Akismet to reduce spam. Learn how your comment data is processed.

Privacy & Cookies: This site uses cookies. By continuing to use this website, you agree to their use.
To find out more, including how to control cookies, see here: Cookie Policy
    ©2025 Fowler Lab | WordPress Theme by SuperbThemes