New preprint: processing SARS-CoV-2 genetics in the cloud Philip Fowler, 31st January 202431st January 2024 In this preprint, we describe how in July 2022 for two weeks seven sites in six continents uploaded raw genetics files derived from sequencing SARS-CoV-2 clinical samples to our cloud-based platform, GPAS. Overall 5,436 samples were uploaded to GPAS and, unsurprisingly at that time, various Omicron lineages dominated. More surprisingly was the finding that highly similar SARS-CoV-2 genomes could be found in multiple continents, indicative of the rapid rate that the virus was transported around the world. Share this: Click to share on X (Opens in new window) X Click to share on Bluesky (Opens in new window) Bluesky Click to email a link to a friend (Opens in new window) Email Click to share on LinkedIn (Opens in new window) LinkedIn Click to share on Mastodon (Opens in new window) Mastodon Related clinical microbiology distributed computing gpas
citizen science Automated detection of bacterial growth on 96-well plates (AMyGDA) 11th December 20175th August 2018 I am involved in an international collaboration, the Comprehensive Resistance Prediction for Tuberculosis: an International Consortium… Share this: Click to share on X (Opens in new window) X Click to share on Bluesky (Opens in new window) Bluesky Click to email a link to a friend (Opens in new window) Email Click to share on LinkedIn (Opens in new window) LinkedIn Click to share on Mastodon (Opens in new window) Mastodon Read More
distributed computing A way of using Azure in computer-based practicals 1st December 201714th March 2018 Last year I took over coordinating a three-week Bioinformatics module for the Interdisciplinary Bioscience Doctoral… Share this: Click to share on X (Opens in new window) X Click to share on Bluesky (Opens in new window) Bluesky Click to email a link to a friend (Opens in new window) Email Click to share on LinkedIn (Opens in new window) LinkedIn Click to share on Mastodon (Opens in new window) Mastodon Read More
computing GROMACS on AWS: Performance and Cost 17th January 20163rd March 2019 So we have created an Amazon Machine Image (AMI) with GROMACS installed. In this post… Share this: Click to share on X (Opens in new window) X Click to share on Bluesky (Opens in new window) Bluesky Click to email a link to a friend (Opens in new window) Email Click to share on LinkedIn (Opens in new window) LinkedIn Click to share on Mastodon (Opens in new window) Mastodon Read More