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Predicting antibiotic resistance de novo

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Fowler Lab
Fowler Lab

Predicting antibiotic resistance de novo

Category: computing

computing

Compression FASTA files natively in Python

Philip Fowler, 23rd May 201926th May 2019

The M. tuberculosis genome is pretty small, only 4.4 million nucleotides, so storing all that…

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computing

Software Carpentry Workshop

Philip Fowler, 10th September 201810th September 2018

Last week on Thursday and Friday I helped run a Software Carpentry workshop in the…

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antimicrobial resistance

New software: gemucator

Philip Fowler, 4th September 20184th September 2018

Short for “Genbank Mutation Locator”. A simple Python3 package that if you pass it a…

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antimicrobial resistance

New software: pygsi

Philip Fowler, 31st August 2018

Whenever a paper involving sequencing the genome of bacteria (or other species for that matter),…

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computing

Goodbye glados

Philip Fowler, 11th July 2018

Setting up my own computing cluster with a batch queuing system and then using it…

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distributed computing

Read Ellen’s Azure post

Philip Fowler, 26th January 201814th March 2018

As I’ve described here, here and here, I ran a Hackathon instead of the more…

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