computing Compression FASTA files natively in Python Philip Fowler, 23rd May 201926th May 2019 The M. tuberculosis genome is pretty small, only 4.4 million nucleotides, so storing all that… Continue Reading
computing Software Carpentry Workshop Philip Fowler, 10th September 201810th September 2018 Last week on Thursday and Friday I helped run a Software Carpentry workshop in the… Continue Reading
antimicrobial resistance New software: gemucator Philip Fowler, 4th September 20184th September 2018 Short for “Genbank Mutation Locator”. A simple Python3 package that if you pass it a… Continue Reading
antimicrobial resistance New software: pygsi Philip Fowler, 31st August 2018 Whenever a paper involving sequencing the genome of bacteria (or other species for that matter),… Continue Reading
computing Goodbye glados Philip Fowler, 11th July 2018 Setting up my own computing cluster with a batch queuing system and then using it… Continue Reading
distributed computing Read Ellen’s Azure post Philip Fowler, 26th January 201814th March 2018 As I’ve described here, here and here, I ran a Hackathon instead of the more… Continue Reading