tuberculosis Numpy v Biopython Philip Fowler, 25th July 20194th August 2019 Having only recently having to write bioinformatics Python code that e.g. interrogate GenBank files to… Continue Reading
antimicrobial resistance Genetics and Tuberculosis: A Case of New Meets Old Philip Fowler, 12th July 2019 I was very pleased to be invited to contribute to this “Voices” article organised by… Continue Reading
antimicrobial resistance BioExcel Alchemical Free Energy workshop Philip Fowler, 17th June 2019 Last month I was invited to give a talk on using alchemical free energy methods… Continue Reading
computing Compression FASTA files natively in Python Philip Fowler, 23rd May 201926th May 2019 The M. tuberculosis genome is pretty small, only 4.4 million nucleotides, so storing all that… Continue Reading
antimicrobial resistance New preprint: Predicting pyrazinamide resistance by machine learning Philip Fowler, 29th April 201929th April 2019 Usually, the protein that an antibiotic binds is essential for bacterial survival, which is how… Continue Reading
Installing pmx Philip Fowler, 4th February 201924th October 2022 The current version of pmx is Python2. Thanks to Dom we know there is a… Continue Reading