Skip to content
Fowler Lab
Fowler Lab

Predicting antibiotic resistance de novo

  • News
  • Research
    • Overview
    • Manifesto
    • Software
    • Reproducibility
    • Publications
  • Members
  • Teaching
  • Contact
    • PhDs
  • Wiki
Fowler Lab
Fowler Lab

Predicting antibiotic resistance de novo

DTC Programming Course

Philip Fowler, 31st October 20169th December 2016

Advanced Resources for the Curious

  • http://software-carpentry.org
  • http://www.datacarpentry.org
  • http://rosalind.info

Comics

  • http://xkcd.com
  • http://phdcomics.com

Installing python on your laptop

A good guide is to follow SciPy’s instructions. On my Mac I install python and its modules using MacPorts. For Windows I’d use Enthought Canopy or Anaconda. These work on Mac and Linux as well and give you python + a broad distribution of modules, including numpy and scipy.

Free Geeky Resources

GitHub do a great Student Developer Pack which includes some free Amazon Web Services time and also a GitHub account with unlimited repositories.

Linux tips

  • TAB autocomplete
  • use the up and down ARROW keys to cycle through previous commands
  • HISTORY displays your previous commands. Each has an associated number e.g. 534.

!534

Will re-run that command

Share this:

  • Click to share on X (Opens in new window) X
  • Click to share on Bluesky (Opens in new window) Bluesky
  • Click to email a link to a friend (Opens in new window) Email
  • Click to share on LinkedIn (Opens in new window) LinkedIn
  • Click to share on Mastodon (Opens in new window) Mastodon

Related

teaching

Post navigation

Previous post
Next post

Related Posts

computing

Top Tips for hosting a Software Carpentry Boot Camp

6th November 2012

I’ve written a post for the Software Sustainability Institute (who kindly provided the instructors for…

Share this:

  • Click to share on X (Opens in new window) X
  • Click to share on Bluesky (Opens in new window) Bluesky
  • Click to email a link to a friend (Opens in new window) Email
  • Click to share on LinkedIn (Opens in new window) LinkedIn
  • Click to share on Mastodon (Opens in new window) Mastodon
Read More
antimicrobial resistance

2018 PhD projects announced

27th October 20175th August 2018

As described here, one of the main ways of getting funding to studying for a…

Share this:

  • Click to share on X (Opens in new window) X
  • Click to share on Bluesky (Opens in new window) Bluesky
  • Click to email a link to a friend (Opens in new window) Email
  • Click to share on LinkedIn (Opens in new window) LinkedIn
  • Click to share on Mastodon (Opens in new window) Mastodon
Read More
computing

More posts on the Oxford Software Carpentry Boot Camp

7th November 201223rd September 2018

Mike Jackson from the Software Sustainability Institute was one of our instructors last week and…

Share this:

  • Click to share on X (Opens in new window) X
  • Click to share on Bluesky (Opens in new window) Bluesky
  • Click to email a link to a friend (Opens in new window) Email
  • Click to share on LinkedIn (Opens in new window) LinkedIn
  • Click to share on Mastodon (Opens in new window) Mastodon
Read More

Leave a Reply Cancel reply

Your email address will not be published. Required fields are marked *

This site uses Akismet to reduce spam. Learn how your comment data is processed.

Privacy & Cookies: This site uses cookies. By continuing to use this website, you agree to their use.
To find out more, including how to control cookies, see here: Cookie Policy
    ©2025 Fowler Lab | WordPress Theme by SuperbThemes